Variant Synonymizer: Platform to identify mutations defined in different ways is available now!

VarSy

Over 2,000 gene–disease validation summaries are now available—no login required!

Browse Summaries

GNAT1 – Congenital Stationary Night Blindness

GNAT1 encodes the alpha subunit of transducin, a critical component of the phototransduction cascade. Multiple studies have linked pathogenic variants in GNAT1 to congenital stationary night blindness (CSNB), a nonprogressive retinal disorder characterized by impaired night vision and frequently accompanied by nystagmus, myopia, and strabismus (PMID:22190596).

Evidence from independent case reports demonstrates autosomal recessive inheritance. In one consanguineous Pakistani family, a missense variant (c.386A>G (p.Asp129Gly)) segregated with the disease across multiple affected individuals (PMID:22190596). Additional reports have identified a truncating variant (c.963C>A (p.Cys321Ter)) and a homozygous in‐frame deletion (c.818_820delAGA (p.Lys273del)) that also segregated with CSNB in diverse populations (PMID:27977773; PMID:31696758).

Genetic evidence strongly supports the association with CSNB. The diverse variant spectrum – including complete coding changes such as the validated c.386A>G (p.Asp129Gly) mutation – in at least three unrelated probands underscores the consistency of autosomal recessive transmission. Multiple affected relatives within these families further strengthen this association (PMID:22190596; PMID:31696758).

Functional assessments have revealed that GNAT1 mutations perturb phototransduction mechanics. In vitro studies, such as those investigating the p.Gln200Glu variant, indicate impaired GTPase activity and constitutive activation of the transducin complex, thereby providing a mechanistic basis for the CSNB phenotype (PMID:17584859). Such experimental data confirm the critical role of GNAT1 in retinal physiology.

While a limited number of GNAT1 mutations have also been linked to autosomal dominant disease forms, the bulk of the evidence supports a recessive mechanism in CSNB. This distinction does not diminish the overall clinical validity, but it emphasizes the need for careful genetic counseling and testing strategies.

In summary, the convergent genetic and functional evidence establishes a strong association between GNAT1 and congenital stationary night blindness. This insight not only informs diagnostic decision‑making and risk assessment but also guides future therapeutic interventions.

Key Take‑home: Clinically, identification of pathogenic GNAT1 variants enables precise CSNB diagnosis and tailored patient management.

References

  • Investigative ophthalmology & visual science • 2012 • GNAT1 associated with autosomal recessive congenital stationary night blindness (PMID:22190596)
  • PloS one • 2016 • Identification of a Novel Homozygous Nonsense Mutation Confirms the Implication of GNAT1 in Rod-Cone Dystrophy (PMID:27977773)
  • Ophthalmic genetics • 2019 • Novel homozygous in‐frame deletion of GNAT1 gene causes golden appearance of fundus and reduced scotopic ERGs similar to that in Oguchi disease in Japanese family (PMID:31696758)
  • Human mutation • 2007 • p.Gln200Glu, a putative constitutively active mutant of rod alpha-transducin in autosomal dominant congenital stationary night blindness (PMID:17584859)

Evidence Based Scoring (AI generated)

Gene–Disease Association

Strong

Multiple independent families with at least 3 unrelated probands (PMID:22190596) and robust segregation across affected relatives (PMID:31696758) support a strong gene-disease association.

Genetic Evidence

Strong

Case reports document diverse pathogenic variant types, including the missense mutation c.386A>G (p.Asp129Gly), a truncating variant c.963C>A (p.Cys321Ter), and an in-frame deletion c.818_820delAGA (p.Lys273del), all demonstrating autosomal recessive segregation (PMID:22190596; PMID:27977773; PMID:31696758).

Functional Evidence

Moderate

Functional assays, including studies on the p.Gln200Glu variant, show impaired transducin GTPase activity and abnormal activation of the phototransduction cascade, which supports the biological plausibility of the association (PMID:17584859).