Variant Synonymizer: Platform to identify mutations defined in different ways is available now!
Over 2,000 gene–disease validation summaries are now available—no login required!
Pseudohypoaldosteronism type 1 (PHA1) is a rare congenital disorder characterized by renal and multi-organ unresponsiveness to aldosterone, resulting in severe salt wasting, hyperkalaemia, metabolic acidosis, and failure to thrive. The systemic autosomal recessive (AR) form arises from biallelic loss-of-function mutations in the epithelial sodium channel (ENaC) subunit genes, notably SCNN1A which encodes the α-subunit of ENaC.
Initial homozygosity mapping in 11 consanguineous families established linkage of AR-PHA1 to chromosome 12p13.1-pter encompassing SCNN1A, achieving a maximum LOD score of 9.9 (PMID:8824886).
To date, over 45 distinct pathogenic SCNN1A variants have been reported in more than 100 affected individuals, including homozygous missense (c.727T>C (p.Ser243Pro)) (PMID:21653223), nonsense (c.398G>A (p.Cys133Tyr)) (PMID:12376807), and frameshift (c.729_730del (p.Val245GlyfsTer65)) (PMID:33829730) alleles. Segregation analyses across multiple pedigrees confirm autosomal recessive inheritance with full concordance between homozygosity and disease manifestation.
Clinically, homozygous SCNN1A mutations present in the neonatal period with profound hyponatraemia (HP:0002902), hyperkalaemia (HP:0002153), metabolic acidosis (HP:0001942), and failure to thrive (HP:0001508). Heterozygous carriers exhibit subclinical salt-losing features, such as elevated sweat sodium and chloride concentrations, without overt hormonal disturbances (PMID:18547339).
Functional studies in Xenopus laevis oocytes demonstrate markedly reduced ENaC currents for p.Ser243Pro (~20% reduction) (PMID:21653223), a dominant-negative effect of p.Ser562Pro (PMID:18547339), and an 83% activity reduction plus decreased protein expression for p.Phe226Cys correlating with a mild, transient phenotype (PMID:37134141).
Collectively, the extensive genetic linkage, segregation, and functional data establish a definitive gene–disease association between SCNN1A and systemic pseudohypoaldosteronism type 1. Early molecular diagnosis enables tailored sodium supplementation and electrolyte management, significantly improving neonatal outcomes.
Gene–Disease AssociationDefinitiveLinkage in 11 families (LOD 9.9) and >45 pathogenic variants in >100 affected individuals Genetic EvidenceStrongMultiple unrelated consanguineous families, >100 probands, segregation concordance Functional EvidenceModerateXenopus oocyte assays show significant ENaC loss of function across several mutations |