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SLC6A8 – Creatine Transporter Deficiency

X-linked creatine transporter deficiency (CTD) is caused by hemizygous pathogenic variants in SLC6A8 on Xq28, leading to impaired cerebral creatine uptake and bioenergetic failure. Clinically, CTD presents with intellectual disability, delayed speech, and seizures, often accompanied by behavioral disturbances.

Genetic Evidence: Segregation analysis in seven unrelated families (13 affected males) confirmed co-segregation of loss-of-function SLC6A8 variants with CTD (PMID:12889669). Additional sporadic cases report de novo or maternally inherited mutations in male probands (PMID:18350323). Over 38 pathogenic alleles—including missense, nonsense, splice-site, and frameshift variants—have been described, reaching the ClinGen genetic cap for X-linked associations (PMID:22281021). Representative mutation: c.1059_1061delCTT (p.Phe354del).

Clinical Phenotype: Affected males exhibit global developmental delay/intellectual disability (HP:0001249), delayed speech and language development (HP:0000750), and seizures (HP:0001250). Phenotypic severity ranges from mild cognitive impairment to severe neurodevelopmental disorders with autism spectrum features and hypotonia.

Functional Evidence: In vitro creatine uptake assays in patient fibroblasts and SLC6A8-deficient cell lines demonstrate marked transport deficiency for pathogenic variants, which is restored by wild-type SLC6A8 complementation, supporting a haploinsufficiency mechanism (PMID:17465020; PMID:16763899). Transcriptomic profiling of fibroblasts reveals dysregulation of extracellular matrix and cytoskeleton genes downstream of transporter loss (PMID:24962355).

Therapeutic Insights: Oral creatine plus arginine and glycine supplementation yields modest improvements in seizures and cognition, particularly in cases with residual transporter function or in females (PMID:37891751). AAV2/9-mediated Slc6a8 gene therapy in a rat model prevented locomotor deficits and partially restored brain creatine levels (PMID:38745894). High-throughput chemoproteomic screening identified small-molecule correctors that rescue trafficking and function of select SLC6A8 missense mutants in vitro and in knock-in mice (PMID:39418577).

Conclusion: The definitive gene–disease association is supported by extensive segregation data, a broad variant spectrum, concordant functional assays, and emerging therapeutic modalities. CTD should be considered in males with intellectual disability, speech delay, and seizures, as timely diagnosis enables metabolic screening, genetic counselling, and potential targeted treatments.

References

  • Journal of inherited metabolic disease | 2003 | X-linked creatine transporter defect: an overview. PMID:12889669
  • Human mutation | 2007 | Functional characterization of missense variants in the creatine transporter gene (SLC6A8): improved diagnostic application. PMID:17465020
  • Journal of inherited metabolic disease | 2006 | Overexpression of wild-type creatine transporter (SLC6A8) restores creatine uptake in primary SLC6A8-deficient fibroblasts. PMID:16763899
  • Human mutation | 2014 | RNA sequencing of creatine transporter (SLC6A8) deficient fibroblasts reveals impairment of the extracellular matrix. PMID:24962355
  • Brain sciences | 2023 | Diagnosis and Treatment of X-Linked Creatine Transporter Deficiency: Case Report and Literature Review. PMID:37891751
  • Molecular therapy. Methods & clinical development | 2024 | Rescue by AAV2/9-2YF intracisternal gene therapy in a rat model of creatine transporter deficiency. PMID:38745894
  • ACS chemical biology | 2024 | Novel Corrector for Variants of SLC6A8: A Therapeutic Opportunity for Creatine Transporter Deficiency. PMID:39418577

Evidence Based Scoring (AI generated)

Gene–Disease Association

Definitive

Extensive genetic and functional evidence over >20 y; consistent segregation and functional concordance

Genetic Evidence

Strong

At least 13 probands in seven unrelated families (PMID:12889669) and additional sporadic cases (PMID:18350323)

Functional Evidence

Strong

Multiple in vitro assays show loss of transport for pathogenic variants and rescue by wild-type expression (PMID:17465020; PMID:16763899)