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NHLRC1 – Lafora Disease

Lafora disease is a fatal, teenage-onset, autosomal recessive progressive myoclonus epilepsy characterized by myoclonus, generalized seizures, and cognitive decline. Biallelic pathogenic variants in NHLRC1, encoding the E3-ubiquitin ligase malin, disrupt glycogen metabolism leading to polyglucosan accumulation and neurodegeneration Gene SymbolDisease Name.

Genetic studies in 25 patients from 23 families identified NHLRC1 mutations in 21 probands, establishing it as a frequent cause of Lafora disease with an overall milder course than EPM2A-associated cases PMID:15781812. Disease follows autosomal recessive inheritance with complete penetrance in adolescence.

Segregation analysis in a family with four affected siblings homozygous for the p.Asp146Asn variant supports recessive transmission and intra-familial concordance of the phenotype PMID:16190947. Additional segregation data are consistent across multiple reports.

The variant spectrum in NHLRC1 includes missense (e.g., c.436G>A (p.Asp146Asn)), nonsense (c.793C>T (p.Arg265Ter)), frameshift (c.468_469del (p.Gly158fs)), and whole-gene deletions, with recurrent alleles observed in specific populations. Founder effects for c.436G>A have been reported in Apulian and Turkish cohorts.

Functional assays demonstrate that malin mutants fail to ubiquitinate key glycogen regulators (R5/PTG), leading to abnormal glycogen accumulation in cell models. Silencing of NHLRC1 increases ER-stress sensitivity and impairs proteasomal function, paralleling findings in malin-deficient mice that develop Lafora bodies and autophagy defects PMID:19529779; PMID:22186026.

No studies refute the NHLRC1–Lafora disease association. Modifier genes (e.g., PPP1R3C) may modulate disease progression, but NHLRC1 remains the primary genetic determinant.

Integration of clinical, segregation, and functional data supports a strong gene-disease relationship. NHLRC1 genetic testing is essential for definitive diagnosis, family counseling, and stratifying patients for emerging therapies.

Key Take-home: NHLRC1 sequencing should be incorporated into diagnostic workflows for adolescents with progressive myoclonus epilepsy and cognitive decline.

References

  • Neurology • 2005 • Lafora disease due to EPM2B mutations: a clinical and genetic study. PMID:15781812
  • Epilepsia • 2005 • Late-onset and slow-progressing Lafora disease in four siblings with EPM2B mutation. PMID:16190947
  • PLoS One • 2009 • Increased endoplasmic reticulum stress and decreased proteasomal function in lafora disease models lacking the phosphatase laforin. PMID:19529779
  • Human Molecular Genetics • 2012 • Lafora bodies and neurological defects in malin-deficient mice correlate with impaired autophagy. PMID:22186026

Evidence Based Scoring (AI generated)

Gene–Disease Association

Strong

21 probands from 21 unrelated families with NHLRC1 variants; multi-family segregation and concordant functional data

Genetic Evidence

Strong

21 unrelated probands; segregation in 4 siblings; variant spectrum includes missense, truncating, and deletion alleles

Functional Evidence

Moderate

Malin mutants fail to regulate glycogen metabolism and increase ER stress in cells; malin-deficient mice recapitulate pathology