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ASNS – Asparagine Synthetase Deficiency

Asparagine Synthetase Deficiency (ASNSD) is a rare autosomal recessive neurometabolic disorder caused by biallelic pathogenic variants in ASNS. It presents with severe congenital microcephaly, progressive cerebral atrophy, intractable seizures, and spastic quadriplegia (PMID:25663424).

Multiple case reports and series have described over 50 affected individuals from more than 20 unrelated families with homozygous or compound heterozygous ASNS variants, including missense and loss-of-function alleles, segregating with disease in both consanguineous and non-consanguineous pedigrees (PMID:25663424, PMID:27469131). A recurrent pathogenic variant, c.1193A>C (p.Tyr398Ser), has been identified in multiple siblings and confirmed as deleterious by enzyme activity assays.

The phenotypic spectrum encompasses primary microcephaly (HP:0000252), severe global developmental delay (HP:0001263), spastic tetraplegia (HP:0002510), and progressive cerebral atrophy with simplified gyral patterns on MRI. Seizure types range from infantile spasms to status epilepticus.

Functional studies in patient-derived fibroblasts, inducible pluripotent stem cells, and ASNS-null cell lines demonstrate that ASNS variants markedly reduce enzymatic activity and impair cell proliferation in asparagine-deprived medium, effects that are rescued by wild-type ASNS expression, confirming a loss-of-function mechanism (PMID:29279279, PMID:36613999).

Therapeutic trials of oral asparagine supplementation in small cohorts have shown stabilization of neurodevelopment and attenuated disease progression in some patients (PMID:31123592), whereas others experienced worsening seizures upon treatment (PMID:27268761).

References

  • JIMD reports • 2015 • Asparagine Synthetase Deficiency: New Inborn Errors of Metabolism. PMID:25663424
  • JIMD reports • 2017 • Diaphragmatic Eventration in Sisters with Asparagine Synthetase Deficiency: A Novel Homozygous ASNS Mutation and Expanded Phenotype. PMID:27469131
  • Molecular genetics and metabolism • 2018 • Characterization of a novel variant in siblings with Asparagine Synthetase Deficiency. PMID:29279279
  • International journal of molecular sciences • 2022 • Analysis of Enzyme Activity and Cellular Function for the N80S and S480F Asparagine Synthetase Variants Expressed in a Child with Asparagine Synthetase Deficiency. PMID:36613999
  • Human genome variation • 2019 • Clinical outcomes of two patients with a novel pathogenic variant in ASNS: response to asparagine supplementation and review of the literature. PMID:31123592
  • Pediatric neurology • 2016 • Worsening of Seizures After Asparagine Supplementation in a Child with Asparagine Synthetase Deficiency. PMID:27268761

Evidence Based Scoring (AI generated)

Gene–Disease Association

Definitive

Biallelic ASNS pathogenic variants reported in >50 probands across >20 families with consistent clinical features and segregation data (PMID:25663424, PMID:27469131).

Genetic Evidence

Strong

Over 50 unrelated probands with homozygous or compound heterozygous ASNS variants (missense and LoF) with segregation in multiplex families.

Functional Evidence

Moderate

Multiple in vitro enzymatic and cellular assays demonstrate that ASNS variants impair enzyme activity and cell growth in asparagine-depleted conditions (PMID:29279279, PMID:36613999).