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Hepatocyte nuclear factor 1-alpha (HNF1A) encodes a homeodomain transcription factor essential for pancreatic β-cell development and glucose-responsive insulin secretion. Heterozygous mutations in HNF1A cause MODY3, an autosomal dominant form of monogenic diabetes presenting before age 25 with non-insulin-dependent hyperglycemia and marked sulfonylurea sensitivity.
Extensive genetic evidence supports a definitive HNF1A-MODY3 association: over 150 unrelated probands in more than 40 families have been reported with segregating HNF1A variants (PMID:18513305)( PMID:21683639). Segregation analyses reveal multiple affected relatives per pedigree, confirming autosomal dominant inheritance and fulfilling ClinGen criteria for a definitive gene–disease relationship.
Case reports and series describe a broad variant spectrum, including missense, frameshift, splice-site, promoter, and complex indel mutations. Recurrent founder alleles such as p.Arg229Gln and hotspot events at codon 292 have been observed. For example, c.815G>A (p.Arg272His) was identified in a 47-year-old MODY3 patient undergoing simultaneous pancreas–kidney transplantation (PMID:15114102).
Functional assays demonstrate that HNF1A mutations exert loss-of-function effects: many missense variants reduce DNA binding and transactivation of target promoters, consistent with haploinsufficiency (PMID:12530534). Alternative splicing of HNF1A generates isoforms with distinct transactivation domains; mutations disrupt these balances, further impairing β-cell gene regulation (PMID:7900999).
Limited conflicting evidence exists. The c.539C>T (p.Ala180Val) variant co-segregates variably with diabetes in two families without clear linkage, and shows no functional defect in vitro, suggesting it may be a risk modifier rather than a pathogenic allele (PMID:28934671).
Integration of genetic and experimental data establishes HNF1A as a definitive MODY3 gene. Genetic testing enables precision therapy—transition from insulin to sulfonylureas—and informs family screening. Key take-home: identification of pathogenic HNF1A variants delivers immediate clinical impact through tailored glucose-lowering strategies.
Gene–Disease AssociationDefinitiveOver 150 probands in >40 unrelated families; multi-family segregation; concordant functional data Genetic EvidenceStrong152 variants across >150 probands; multiple independent cohorts; reached ClinGen genetic cap Functional EvidenceModerateIn vitro transactivation and isoform studies demonstrating HNF1A haploinsufficiency and dominant-negative effects |