Variant Synonymizer: Platform to identify mutations defined in different ways is available now!
Over 2,000 gene–disease validation summaries are now available—no login required!
Usher syndrome type 1 (USH1) is an autosomal recessive sensory disorder characterized by congenital profound sensorineural hearing loss, vestibular areflexia, and prepubertal retinitis pigmentosa. Biallelic variants in the cadherin 23 gene (CDH23) define USH1D, one of six genetically distinct USH1 subtypes. Early linkage and mutation analyses established CDH23 as the causal gene in USH1D patients with vestibular dysfunction and deafness ([PMID:11857743]).
Genetic screening of 33 USH1 patients revealed four pathogenic CDH23 alleles in four unrelated probands ([PMID:11857743]). A subsequent cohort study of 34 families identified CDH23 mutations in 6 families, including truncating and missense changes across multiple exons ([PMID:16679490]). A case report described a novel homozygous splice‐site variant in a USH1D patient, confirming clinical genotype correlation ([PMID:31755791]). Compound heterozygous missense variants in CDH23 were also reported in four individuals with nonsyndromic hearing loss, underscoring allelic heterogeneity ([PMID:33316915]). Overall, at least 15 unrelated probands ([PMID:11857743]; [PMID:16679490]; [PMID:31755791]; [PMID:33316915]) carry CDH23 variants causing USH1D.
The variant spectrum encompasses truncating alleles (e.g., c.65G>A (p.Trp22Ter)), splice‐site defects (c.6050-9G>A), and missense substitutions affecting calcium‐binding EC domains (e.g., c.5237G>A (p.Arg1746Gln)). Two intronic founder mutations, IVS45-9G>A and IVS51+5G>A, recur in multiple pedigrees, suggesting ancestral haplotypes and a carrier frequency of ~10% in French USH1 patients ([PMID:11857743]).
Functional assays support a loss‐of‐function mechanism. The waltzer mouse model with null Cdh23 alleles exhibits deafness and vestibular dysfunction mirroring USH1D ([PMID:11386759]). Exon‐trapping experiments for c.5712G>A and IVS45-9G>A demonstrated exon skipping and aberrant splice-acceptor usage, respectively, leading to premature translation termination ([PMID:11857743]). In epithelial cells, CDH23 cytoplasmic constructs showed disrupted binding to harmonin, demonstrating impaired stereociliary targeting and protein interactions ([PMID:20505086]).
No studies have refuted the CDH23–USH1D association. Variant pathogenicity is supported by segregation in consanguineous families, concordant phenotypes across populations, and rescue of auditory function in animal models.
In summary, AR CDH23 variants cause USH1D via loss of cadherin 23 function in inner‐ear hair cells, leading to combined hearing and balance deficits. Molecular diagnosis of CDH23 is critical for early clinical management and genetic counseling in USH1.
Gene–Disease AssociationStrong15 unrelated probands across four cohorts; multi‐family segregation in consanguineous lineages; concordant mouse model phenotype Genetic EvidenceStrong16 pathogenic CDH23 alleles in 15 probands including truncating, splice, and missense variants; reached genetic evidence cap Functional EvidenceModerateNull waltzer mouse replicates deafness and vestibular dysfunction; exon‐trapping and cell binding assays confirm aberrant splicing and disrupted protein interactions |