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PRDM16 – Dilated Cardiomyopathy

PRDM16 is a transcriptional regulator whose haploinsufficiency has been implicated in autosomal dominant dilated cardiomyopathy (PRDM16; Dilated Cardiomyopathy).

Multiple unrelated pediatric cases have demonstrated de novo PRDM16 frameshift variants in dilated cardiomyopathy. In a cohort of pediatric heart failure, one child harbored a de novo c.1047dup (p.Ser350fs) variant in PRDM16 (PMID:29367541). In a separate series of 131 adult dilated cardiomyopathy biopsies, five individuals carried four rare nonsynonymous PRDM16 variants, including c.2104A>T (p.Lys702Ter) (PMID:23768516).

Inheritance is predominantly autosomal dominant with de novo occurrence; no multi-generation segregation has been reported. Across these six probands, variant classes include frameshift and nonsense, supporting loss-of-function as a key mechanism.

Experimental data substantiate PRDM16’s role in cardiac structure and function. Zebrafish modeling of PRDM16 haploinsufficiency recapitulates contractile dysfunction and impaired cardiomyocyte proliferation (PMID:23768516). Cardiac-specific Prdm16 knockout mice develop conduction abnormalities, fibrosis, and cardiomyocyte hypertrophy consistent with dilated cardiomyopathy (PMID:32083975).

No studies have reported conflicting phenotypes for PRDM16 in dilated cardiomyopathy. The genetic and functional concordance across species supports a pathogenic haploinsufficiency mechanism.

Key Take-home: PRDM16 loss-of-function variants cause autosomal dominant dilated cardiomyopathy, warranting inclusion of PRDM16 in clinical cardiomyopathy gene panels.

References

  • Journal of cardiovascular development and disease • 2017 • Diagnostic Yield of Whole Exome Sequencing in Pediatric Dilated Cardiomyopathy PMID:29367541
  • American journal of human genetics • 2013 • Fine mapping of the 1p36 deletion syndrome identifies mutation of PRDM16 as a cause of cardiomyopathy PMID:23768516
  • American journal of physiology. Heart and circulatory physiology • 2020 • Cardiac-specific inactivation of Prdm16 effects cardiac conduction abnormalities and cardiomyopathy-associated phenotypes PMID:32083975

Evidence Based Scoring (AI generated)

Gene–Disease Association

Moderate

Six unrelated probands with de novo PRDM16 LoF or missense variants in dilated cardiomyopathy, limited familial segregation but concordant functional data

Genetic Evidence

Moderate

Six unrelated probands with de novo or rare PRDM16 LoF/missense variants in dilated cardiomyopathy

Functional Evidence

Moderate

PRDM16 haploinsufficiency in zebrafish and murine cardiac-specific knockout models recapitulate contractile dysfunction and fibrosis