Variant Synonymizer: Platform to identify mutations defined in different ways is available now!

VarSy

Over 2,000 gene–disease validation summaries are now available—no login required!

Browse Summaries

LRPPRC – Leigh Syndrome, French-Canadian Type

Leucine-rich pentatricopeptide repeat-containing protein (LRPPRC) is a mitochondrial RNA-binding factor essential for the stability and polyadenylation of mitochondrial transcripts. Pathogenic biallelic variants in LRPPRC cause the French-Canadian variant of Leigh syndrome (LSFC), an autosomal recessive disorder characterized by isolated cytochrome c oxidase (COX) deficiency, severe lactic acidosis and early neurodevelopmental impairment. LSFC originates from a founder missense allele (p.Ala354Val) in the Saguenay-Lac-Saint-Jean region of Québec, but subsequent reports have identified additional non-Québec patients with similar phenotypes.

Genetic evidence includes ten non-Québec probands from seven unrelated families and an isolated case report with compound heterozygous or homozygous LRPPRC variants under an autosomal recessive model (PMID:26510951; PMID:29152527). Segregation of variants with disease has been confirmed in multiple pedigrees. The variant spectrum encompasses missense and null alleles, including c.3130C>T (p.Arg1044Ter) (PMID:29152527), c.3430C>T (p.Arg1144Cys) and c.4078G>A (p.Ala1360Thr).

Functional studies demonstrate that patient fibroblasts and muscle homogenates harbor reduced LRPPRC protein, decreased steady-state levels of mitochondrial mRNAs and isolated COX assembly defects, recapitulated by siRNA knockdown in control cells (PMID:20200222). The 2015 Brain study extended these findings to a multisystem phenotype outside Québec, showing additional cardiomyopathy and congenital malformations alongside COX and complex I assembly defects in diverse ethnicities (PMID:26510951).

Therapeutic insights arise from in vitro studies where low-concentration methylene blue restores metabolic activity and ATP production in LSFC fibroblasts homozygous or compound heterozygous for LRPPRC mutations, highlighting a potential targeted treatment strategy (PMID:22202226).

Collectively, the robust genetic and functional concordance across multiple families and models supports a Strong clinical validity classification. Targeted sequencing of LRPPRC should be included in diagnostic panels for early-onset lactic acidosis with isolated COX deficiency to enable timely management and genetic counseling.

Key Take-home: Biallelic LRPPRC variants underlie autosomal recessive Leigh syndrome, French-Canadian type, and should be tested in infants presenting with early lactic acidosis, neurodevelopmental delay, and COX deficiency.

References

  • Child neurology open • 2017 • Novel LRPPRC Mutation in a Boy With Mild Leigh Syndrome, French-Canadian Type Outside of Québec PMID:29152527
  • Molecular biology of the cell • 2010 • LRPPRC and SLIRP interact in a ribonucleoprotein complex that regulates posttranscriptional gene expression in mitochondria. PMID:20200222
  • Brain : a journal of neurology • 2015 • LRPPRC mutations cause early-onset multisystem mitochondrial disease outside of the French-Canadian population. PMID:26510951
  • Journal of pharmacy & pharmaceutical sciences • 2011 • Low-concentration methylene blue maintains energy production and strongly improves survival of Leigh syndrome French Canadian skin fibroblasts. PMID:22202226

Evidence Based Scoring (AI generated)

Gene–Disease Association

Strong

Eleven probands from eight unrelated families with biallelic LRPPRC variants, segregation in multiple pedigrees, and concordant functional data

Genetic Evidence

Strong

10 probands from seven unrelated families with compound heterozygous or homozygous LRPPRC variants, including missense and nonsense mutations; segregation demonstrated

Functional Evidence

Moderate

Patient fibroblast and muscle studies show reduced LRPPRC protein, decreased mitochondrial mRNA levels and isolated cytochrome c oxidase defects; knockdown models recapitulate phenotype