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NLRP3 encodes cryopyrin, a component of the inflammasome that regulates caspase-1 activation and IL-1β processing. Heterozygous gain-of-function variants in NLRP3 cause CINCA syndrome, a severe neonatal autoinflammatory disease characterized by urticarial rash, recurrent fever, chronic meningitis, and arthropathy (HP:0000988, HP:0001945, HP:0001287). Inheritance is autosomal dominant, with both de novo and familial cases.
Initial genetic studies identified distinct missense mutations in seven unrelated CINCA probands (PMID:12032915) and in 13 additional patients (PMID:12483741). Subsequent larger cohorts, including a Chinese neonatal series, documented over 100 molecularly confirmed cases (PMID:38250066), with de novo variants in more than 20 patients and segregation in multiple pedigrees.
Variant spectrum is dominated by missense changes in the NACHT domain, including hotspot codons Asp303 and Met406. One representative pathogenic allele is c.515T>C (p.Ile172Thr). Somatic mosaicism accounts for disease in 69% of conventionally mutation-negative patients (18/26) (PMID:21702021), highlighting low-level mosaicism as a key pathogenic mechanism.
Functional assays demonstrate that disease-associated cryopyrin mutants bind ASC constitutively, trigger spontaneous caspase-1 activation, and drive excessive IL-1β/IL-18 secretion in monocytic cells (PMID:15020601). Mutant cryopyrin also induces cathepsin B–dependent monocyte necrosis and NF-κB activation, and knock-in mouse models recapitulate the human inflammatory phenotype and respond to IL-1 blockade.
Approximately 40% of clinically diagnosed CINCA patients lack germline NLRP3 mutations by conventional sequencing, but deep sequencing and iPSC-derived macrophage studies reveal somatic mosaicism and confirm NLRP3 inflammasome hyperactivation. IL-1 receptor antagonists (anakinra, canakinumab) produce rapid and sustained remission, preventing irreversible neurologic and skeletal sequelae.
Integration of extensive genetic, segregation, and functional data supports a definitive association between NLRP3 and CINCA syndrome. Early genetic diagnosis enables prompt IL-1–targeted therapy and improves long-term outcomes. Key take-home: NLRP3 gain-of-function variants drive CINCA syndrome via inflammasome hyperactivation, defining a clinically actionable diagnostic and therapeutic paradigm.
Gene–Disease AssociationDefinitive
Genetic EvidenceStrongNumerous heterozygous gain-of-function variants in over 100 probands, de novo in >20, segregation in multiple pedigrees Functional EvidenceStrongConcordant inflammasome activation assays with mutant cryopyrin, elevated IL-1β/IL-18, cathepsin B–dependent monocyte death, and responsive animal models |