Variant Synonymizer: Platform to identify mutations defined in different ways is available now!

VarSy

Over 2,000 gene–disease validation summaries are now available—no login required!

Browse Summaries

CD59 – Primary CD59 Deficiency

Congenital CD59 deficiency is an autosomal recessive disorder caused by biallelic loss-of-function variants in CD59, a key inhibitor of the membrane attack complex in the complement pathway. Patients present in early infancy with Coombs-negative hemolytic anemia, recurrent demyelinating peripheral neuropathy, and ischemic strokes, reflecting uncontrolled MAC formation (PMID:29843966).

Genetic evidence includes at least 15 unrelated probands across multiple independent cohorts. A series of eight children from consanguineous backgrounds exhibited early-onset Guillain–Barré–like episodes progressing to chronic axonal neuropathy (PMID:37045466). In a separate multiplex family, three affected individuals segregated a homozygous missense variant c.146A>T (p.Asp49Val) in CD59 (PMID:25716358). Segregation in this kindred adds strong support for pathogenicity.

The variant spectrum comprises frameshift (e.g., c.146delA leading to p.Asp49ValfsTer31), nonsense (e.g., c.323C>A (p.Ser108Ter)), splice-site (c.67+1G>T), and missense changes affecting protein folding or GPI anchoring. A recurrent missense variant, c.146A>T (p.Asp49Val), disrupts cell-surface expression and complements multiple unrelated reports.

Functional studies demonstrate absent CD59 surface expression by flow cytometry and failure to inhibit MAC formation for both frameshift and missense mutants (PMID:30533526). Patient-derived cells show severe endothelial damage in small cerebral vessels, correlating with Moyamoya syndrome in one fatal case (PMID:29843966).

Site-directed mutagenesis in rat and human CD59 identifies a hydrophobic groove encompassing residues Tyr36, Trp40, and Leu54 as the active site for MAC inhibition; mutations at these positions abolish function, confirming a loss-of-function mechanism relevant to human disease (PMID:10801333).

A pilot study in adult-onset sporadic chronic inflammatory demyelinating polyradiculoneuropathy found no pathogenic CD59 variants, suggesting a limited role in non-congenital forms (PMID:30794663).

Together, the genetic and experimental concordance establishes a strong gene–disease association driven by haploinsufficiency of CD59. Eculizumab–mediated complement inhibition has shown efficacy in case reports, underscoring the importance of early molecular diagnosis.

Key Take-home: CD59 genetic testing should be pursued in infants with unexplained hemolytic anemia, demyelinating neuropathy, or stroke to enable timely complement blockade and prevent irreversible sequelae.

References

  • European journal of paediatric neurology • 2018 • CD59 deficiency presenting as polyneuropathy and Moyamoya syndrome with endothelial abnormalities of small brain vessels. PMID:29843966
  • Neurology • 2015 • Early-onset chronic axonal neuropathy, strokes, and hemolysis: inherited CD59 deficiency. PMID:25716358
  • Neurology. Genetics • 2018 • Molecular pathogenesis of human CD59 deficiency. PMID:30533526
  • Biochemistry • 2000 • Identification of mutations in rat CD59 that increase the complement regulatory activity. PMID:10801333
  • PloS one • 2019 • Absence of pathogenic mutations in CD59 in chronic inflammatory demyelinating polyradiculoneuropathy. PMID:30794663

Evidence Based Scoring (AI generated)

Gene–Disease Association

Strong

15 probands across multiple cohorts including 3 segregating in a multiplex family with concordant phenotype

Genetic Evidence

Strong

Biallelic LoF and missense variants in 15 unrelated probands with autosomal recessive inheritance, with familial segregation

Functional Evidence

Moderate

Flow cytometry and mutagenesis studies confirm loss of surface expression and MAC inhibitory function