Variant Synonymizer: Platform to identify mutations defined in different ways is available now!

VarSy

Over 2,000 gene–disease validation summaries are now available—no login required!

Browse Summaries

NMNAT1 – Cone-Rod Dystrophy

NMNAT1 encodes the nuclear nicotinamide mononucleotide adenylyltransferase 1 essential for NAD⁺ biosynthesis and photoreceptor survival. Biallelic variants in NMNAT1 have been implicated in autosomal recessive cone-rod dystrophy (CRD), a condition marked by early macular atrophy and progressive loss of cone function (2 probands) (PMID:29184169).

Inheritance is autosomal recessive, with two unrelated individuals reported: Case 1 carried a homozygous missense variant c.271G>A (p.Glu91Lys) (PMID:29184169), and Case 2 was compound heterozygous for c.53A>G (p.Asn18Ser) and c.769G>A (p.Glu257Lys) (PMID:29184169). No additional affected relatives were described, and no segregation data are available.

All three pathogenic changes are missense substitutions affecting conserved residues within the enzymatic domain, with no loss-of-function or splice variants reported in CRD patients. The spectrum includes c.271G>A (p.Glu91Lys), c.53A>G (p.Asn18Ser), and the hypomorphic c.769G>A (p.Glu257Lys), the latter known for reduced penetrance in LCA when homozygous (PMID:24830548).

Functional characterization of NMNAT1 mutants associated with retinal degeneration demonstrates that many missense alleles retain baseline enzymatic activity but lose stability under stress, leading to reduced NAD⁺ synthesis in photoreceptors. Heat-shock assays revealed mutant proteins with accelerated unfolding compared to wild type (PMID:26018082). In a knock-in mouse, the p.Val9Met allele induced retina-specific NAD⁺ depletion and elevated poly(ADP-ribose), culminating in photoreceptor apoptosis (PMID:33709122).

Mouse models carrying patient-derived NMNAT1 mutations recapitulate the human phenotype, exhibiting early photoreceptor loss, optic atrophy, and diminished electroretinogram responses. Gene augmentation via AAV-mediated NMNAT1 delivery rescued retinal structure and function in p.Val9Met mice, underscoring therapeutic potential (PMID:27207593); (PMID:32775493).

Despite limited case numbers, genetic and robust experimental data collectively support a moderate clinical validity for NMNAT1 in cone-rod dystrophy. Further identification of additional families and segregation studies will strengthen this association. Key take-home: NMNAT1 should be included in genetic testing panels for autosomal recessive CRD with macular atrophy.

References

  • European journal of human genetics • 2018 • NMNAT1 variants cause cone and cone-rod dystrophy PMID:29184169
  • JAMA ophthalmology • 2014 • Nonpenetrance of the most frequent autosomal recessive leber congenital amaurosis mutation in NMNAT1 PMID:24830548
  • The Journal of biological chemistry • 2015 • Characterization of Leber Congenital Amaurosis-associated NMNAT1 Mutants PMID:26018082
  • Human molecular genetics • 2021 • Mutant Nmnat1 leads to a retina-specific decrease of NAD+ accompanied by increased poly(ADP-ribose) in a mouse model of NMNAT1-associated retinal degeneration PMID:33709122
  • The American journal of pathology • 2016 • Mouse Models of NMNAT1-Leber Congenital Amaurosis (LCA9) Recapitulate Key Features of the Human Disease PMID:27207593
  • Molecular therapy. Methods & clinical development • 2020 • Gene Therapy Preserves Retinal Structure and Function in a Mouse Model of NMNAT1-Associated Retinal Degeneration PMID:32775493

Evidence Based Scoring (AI generated)

Gene–Disease Association

Moderate

Two unrelated probands with biallelic NMNAT1 variants and supportive experimental and model evidence

Genetic Evidence

Limited

Two probands with biallelic missense variants and no segregation data

Functional Evidence

Strong

Enzymatic assays show reduced stability, multiple mouse models recapitulate retinal degeneration, and gene therapy rescues phenotype