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Whole-exome sequencing in a cohort of 22q11.2 deletion carriers identified a heterozygous frameshift variant in SNX31 exclusively in the individual with schizophrenia, implicating SNX31 as a potential modifier of disease penetrance in this high-risk population. Specifically, a c.963del (p.Trp321CysfsTer23) SNX31 variant was found in the affected proband but absent in a psychosis-free deletion carrier, providing initial genetic evidence for association (PMID:24482440). No additional affected relatives were reported to segregate SNX31 variants.
To date, no functional studies have assessed SNX31’s role in neuronal development or synaptic function relevant to schizophrenia, and the single-patient observation lacks segregation or population-level replication. Notably, a distinct SNX31 frameshift mutation has been shown to underlie familial exudative vitreoretinopathy in a mouse model, indicating that SNX31 disruption is pathogenic in ocular tissues but without known psychiatric manifestations (PMID:37053012). Additional case–control studies and mechanistic work in neural systems are required to substantiate SNX31’s contribution to schizophrenia risk.
Key Take-home: Current data support a limited association between SNX31 and schizophrenia, highlighting the need for further genetic replication and functional characterization before clinical application.
Gene–Disease AssociationLimitedSingle proband with heterozygous SNX31 frameshift variant in a 22q11.2 deletion carrier with schizophrenia ([PMID:24482440]) Genetic EvidenceLimitedOne schizophrenia case with SNX31 c.963del (p.Trp321CysfsTer23); no segregation or replication Functional EvidenceNoneNo functional data linking SNX31 to schizophrenia phenotype |