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A heterozygous de novo DNMT3A splice‐region variant, c.1012_1014+3del, was identified in a five-year-old girl presenting with microcephaly, craniosynostosis, and profound global developmental delay, consistent with Heyn-Sproul-Jackson syndrome (HESJAS) ([PMID:37303757]). Parental testing confirmed absence of the variant, supporting an autosomal dominant de novo inheritance with no affected relatives.
Limited functional data demonstrate that patients with DNMT3A loss-of-function variants exhibit a haploinsufficient DNA methylation profile, indicative of reduced methyltransferase activity and concordant with the microcephalic phenotype ([PMID:37209493]). These findings contrast with the macrocephalic overgrowth seen in Tatton-Brown-Rahman syndrome, expanding the clinical spectrum of DNMT3A pathogenic variants. Diagnostic screening for DNMT3A should be considered in cases of unexplained microcephaly with craniosynostosis and developmental delay.
Gene–Disease AssociationLimitedSingle de novo variant in one proband ([PMID:37303757]); consistent phenotype Genetic EvidenceLimitedSingle de novo splice-region variant in a single proband ([PMID:37303757]) Functional EvidenceLimitedHaploinsufficient methylation profile consistent with loss-of-function ([PMID:37209493]) |