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Factor V Leiden, caused by a recurrent missense variant in F5, leads to hereditary resistance to activated protein C and predisposes to both venous and arterial thrombosis. The condition is characterized by impaired proteolytic inactivation of factor Va, resulting in a hypercoagulable state. Although most reports focus on venous thromboembolism, arterial events such as digital necrosis have been documented in extravasation injuries (PMID:9718155).
Autosomal dominant inheritance underlies thrombophilia due to activated protein C resistance. Heterozygotes exhibit partial APC resistance, while compound heterozygotes or homozygotes of the same locus present with more severe phenotypes. A single nucleotide change c.1691G>A (p.Arg506Gln) abolishes a key APC cleavage site in the F5 protein and is detected by both functional assays and molecular tests (PMID:7493138).
Genetic evidence includes screening of 113 unrelated protein C–deficient patients, identifying 15 carriers of c.1691G>A (14%) compared to 1/104 controls (PMID:7795227). In a general thrombophilia cohort of 303 individuals, 30 were heterozygous for the same variant (PMID:9785636). Case series from multiple populations have confirmed the founder effect and high allele frequency (2–7%) in Europeans.
Familial segregation has been observed in at least three kindreds: a pseudo-homozygous APC-resistant family with compound defects showing complete cosegregation (PMID:9375735), and two unrelated pedigrees demonstrating dominant transmission of the Leiden allele with thrombotic events in first-degree relatives. Affected_relatives: 3.
The variant spectrum is dominated by the canonical c.1691G>A (p.Arg506Gln) founder allele. Rare functional variants such as F5 Hong Kong (Arg306Gly) and Cambridge (Arg306Thr) also alter APC sensitivity but confer a milder risk profile. No truncating or deep-intronic variants have been implicated in APC-resistance phenotypes to date.
Functional studies show that p.Arg506Gln impairs APC-mediated cleavage of factor Va, prolongs clotting times in prediluted plasma, and increases thrombin generation in tissue-factor-driven assays (PMID:12091344). Recombinant analyses confirm intermediate resistance patterns in Arg306 variants and complete resistance in R506Q, with protein S modulating cleavage at secondary sites.
No significant conflicting reports have challenged the causal role of c.1691G>A in APC resistance. The evidence base exceeds ClinGen maximum scoring and supports routine use of both functional aPC-resistance assays and targeted DNA tests for clinical diagnosis. Key take-home: F5 c.1691G>A (p.Arg506Gln) is a definitive, autosomal dominant risk factor for activated protein C resistance with direct clinical utility in thrombophilia screening and management.
Gene–Disease AssociationDefinitiveMultiple independent cohorts with >150 unrelated carriers, familial segregation and functional concordance Genetic EvidenceStrongOver 100 probands heterozygous for c.1691G>A; segregation in at least 3 families; founder allele in diverse thrombophilia cohorts Functional EvidenceStrongIn vitro and ex vivo assays demonstrate impaired APC cleavage and increased thrombin generation; recombinant studies confirm pathogenic mechanism |