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FOXC1 variants have been identified in a small number of patients with congenital aniridia, an autosomal dominant pan-ocular disorder characterized by complete or partial iris hypoplasia ([HP:0000526]). Three unrelated probands harboring heterozygous FOXC1 missense mutations—c.454T>G (p.Trp152Gly) in a newborn with aniridia and developmental glaucoma ([PMID:19279310]), and c.302T>C (p.Leu101Pro) and c.235C>A (p.Pro79Thr) in PAX6-negative aniridia cases ([PMID:27124303])—support a gene–disease link. No multigenerational segregation has been reported and all variants occurred de novo or in singleton cases, yielding limited genetic evidence.
Functional assays of FOXC1 missense alleles demonstrate consistent loss-of-function: the W152G protein fails to be phosphorylated, localize to the nucleus, bind DNA, or transactivate reporters and forms non-aggresome aggregates more severe than L130F ([PMID:19279310]). Additional forkhead domain mutations decrease DNA binding and transactivation across multiple residues ([PMID:11179011]). These data establish a haploinsufficient mechanism but, given the small number of affected individuals and lack of segregation, the overall clinical validity remains limited. Key take-home: FOXC1 sequencing should be considered in PAX6-negative aniridia for accurate diagnosis and counseling.
Gene–Disease AssociationLimitedThree unrelated probands with FOXC1 missense variants; no familial segregation Genetic EvidenceLimited3 probands with de novo FOXC1 variants causing aniridia, lacking segregation data Functional EvidenceModerateMultiple in vitro assays of FOXC1 missense mutations show consistent loss of phosphorylation, DNA binding, nuclear localization, and transactivation |