Variant Synonymizer: Platform to identify mutations defined in different ways is available now!
Over 2,000 gene–disease validation summaries are now available—no login required!
L1CAM encodes the L1 cell adhesion molecule, a transmembrane glycoprotein essential for neuronal migration, axon guidance and fasciculation. MASA syndrome (MONDO:0010559) manifests as intellectual disability, aphasia, shuffling gait and adducted thumbs in hemizygous males, reflecting X-linked recessive inheritance with carrier females typically unaffected.
Genetic evidence for a definitive association includes multiple independent case reports of truncating and missense variants segregating with MASA or overlapping phenotypes. A five-nucleotide deletion in exon 8 causing a frameshift and premature stop codon was found in two affected brothers and a heterozygous sister ([PMID:8786080]). A single-base deletion in exon 22 yielding a truncated protein lacking the transmembrane domain was identified in a 9-year-old boy with hydrocephalus and MASA features, segregating with carrier females ([PMID:9440802]). The first MASA‐only case in Asia harbored a novel nonsense variant c.3496C>T (p.Arg1166Ter) in exon 26 ([PMID:15904436]).
In a cohort of eight unrelated MASA patients, three distinct L1CAM variants—including the recurrent missense c.1792G>A (p.Asp598Asn)—were described, confirming allelic heterogeneity ([PMID:7920660]). Broader surveys identified >34 unique L1CAM mutations across MASA and related HSAS/SPG1 spectra in over 30 families ([PMID:8826452]). These data establish a robust genotype–phenotype correlation with X-linked recessive transmission.
Functional assays demonstrate loss-of-function as the primary mechanism. Most missense mutations in the extracellular domain reduce homophilic and heterophilic ligand binding and impede cell surface trafficking in COS/CHO cells ([PMID:11772994]). Variants such as p.Arg184Gln and p.Trp1036Leu induce partial ER retention with decreased neurite outgrowth in neuronal models ([PMID:20621658]).
No conflicting studies dispute the L1CAM–MASA link. Data from diverse populations and functional concordance across assays reinforce a definitive gene–disease relationship supported by both genetic and experimental evidence.
Key take-home: L1CAM loss-of-function variants cause MASA syndrome via disrupted neuronal adhesion, providing actionable targets for molecular diagnosis, genetic counselling and prenatal testing.
Gene–Disease AssociationDefinitiveMultiple independent studies describing >34 distinct L1CAM variants in >30 unrelated males with MASA syndrome, including multi-family segregation and functional concordance Genetic EvidenceStrongOver 23 variants identified in >35 unrelated probands across case reports and cohorts; clear X-linked recessive segregation ([PMID:8786080]; [PMID:7920660]) Functional EvidenceModerateIn vitro assays show that missense and truncating L1CAM mutations impair homophilic/heterophilic binding and cell surface expression ([PMID:11772994]) and cause ER retention with reduced neurite outgrowth ([PMID:20621658]) |