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MKS1 encodes a B9 domain–containing protein localized to the ciliary transition zone and basal body, essential for primary cilium formation and epithelial morphogenesis. Pathogenic variants in MKS1 cause Meckel-Gruber syndrome and have been implicated in Joubert syndrome (MONDO:0018772) with autosomal recessive inheritance. Clinical presentation of MKS1-related Joubert syndrome (JS) includes the characteristic molar tooth sign, hypotonia, ataxia, and variable organ involvement, reflecting a spectrum from lethal embryonic defects to mild neurodevelopmental ciliopathies.
Biallelic MKS1 variants have been identified in 16 probands across at least ten unrelated families with JS ([PMID:27570071]; [PMID:27377014]; [PMID:33193692]; [PMID:24886560]; [PMID:26490104]). Segregation of homozygous and compound heterozygous alleles in consanguineous pedigrees confirms autosomal recessive transmission with 4 affected relatives observed in one family ([PMID:27570071]).
The variant spectrum includes non-truncating alleles (in-frame deletions such as c.1115_1117del (p.Ser372del)), missense changes (e.g., c.240G>T (p.Trp80Cys)), splice–site and loss-of-function mutations (frameshifts and nonsense). Both hypomorphic and null alleles contribute to phenotypic heterogeneity, and founder deletions (e.g., intronic c.1408-35_1408-7del29) have been reported in specific populations ([PMID:27377014]).
Cellular assays demonstrate that JS-associated MKS1 mutations impair ciliary localization of ARL13B and INPP5E, reduce cilium number and alter ciliary length in patient fibroblasts, and fail to rescue spheroid morphogenesis in three-dimensional culture ([PMID:26490104]). In vitro siRNA knockdown of MKS1 disrupts centriole migration and ciliogenesis in epithelial cell lines, and coimmunoprecipitation confirms interaction with meckelin, implicating a loss-of-function mechanism ([PMID:17185389]).
Animal models further support pathogenicity: Mks1 knockout mice exhibit preaxial polydactyly, brain malformations and renal cystic dysplasia, accompanied by deregulated Wnt/β-catenin and Hh signaling ([PMID:23454480]). Zebrafish mks1 mutants display variable ciliary phenotypes consistent with JS and related syndromes, underscoring tissue-specific functions of MKS1 in vertebrate development ([PMID:36533556]).
Together, genetic and experimental data strongly support MKS1 as a recessive JS gene. While the full allelic series and phenotype modifiers continue to emerge, current evidence meets ClinGen criteria for a Strong gene-disease association. Key Take-home: MKS1 mutation analysis should be included in diagnostic panels for Joubert syndrome to inform genetic counseling and management.
Gene–Disease AssociationStrong16 probands across >10 unrelated families; segregation in multiple consanguineous pedigrees; concordant functional studies Genetic EvidenceStrongBiallelic MKS1 variants (truncating and non-truncating) in 16 probands across five studies meeting recessive inheritance and segregation criteria Functional EvidenceModerateAnimal (mouse, zebrafish) and cellular models demonstrate MKS1’s role in ciliogenesis and regulation of ciliary protein localization consistent with patient phenotypes |