Variant Synonymizer: Platform to identify mutations defined in different ways is available now!

VarSy

Over 2,000 gene–disease validation summaries are now available—no login required!

Browse Summaries

PTEN – Renal Cell Carcinoma

PTEN is a tumor suppressor gene located at chromosome 10q23.3 whose loss of function drives oncogenesis across multiple tissues, including the kidney. Somatic studies identified homozygous deletions and truncating mutations in PTEN in renal carcinoma cell lines and tumor specimens, localizing the critical locus to 10q23.3 (PMID:9090379). These alterations underscore PTEN’s role in restraining cell proliferation via dual lipid and protein phosphatase activities.

Germline PTEN mutations underlie PTEN hamartoma tumor syndrome (PHTS) and confer a greatly elevated risk of renal cell carcinoma (RCC). In a prospective series of 219 PHTS patients, nine developed RCC versus 0.28 expected (age-adjusted SIR 31.7, P < 0.001), predominantly papillary subtype with complete PTEN loss by IHC (PMID:22381246). This cohort provides the first robust evidence of an autosomal dominant predisposition to RCC due to PTEN haploinsufficiency.

Analysis of RCC specimens revealed a spectrum of somatic PTEN mutations, including nonsense (e.g., c.388C>T (p.Arg130Ter)) and frameshift events, as well as missense changes affecting catalytic residues. Notably, truncating mutation c.1003C>T (p.Arg335Ter) has been recurrently observed in advanced renal carcinomas. These variants result in loss of lipid phosphatase function, leading to unchecked PI3K/Akt signaling and tumor progression.

Functional investigations demonstrate that restoration of wild-type PTEN—but not lipid-phosphatase-inactive mutants—suppresses RCC cell proliferation and survival through down-regulation of Akt phosphorylation. PTEN IHC negativity correlates with increased responsiveness to mTOR inhibitors in RCC patients, highlighting its utility as a predictive biomarker for targeted therapy.

Collectively, the genetic and experimental data establish a Moderate level of clinical validity for the PTEN–renal cell carcinoma association. The autosomal dominant inheritance of germline PTEN mutations, combined with frequent somatic inactivation in sporadic RCC, supports PTEN testing in individuals with PHTS and early-onset RCC. PTEN loss informs surveillance strategies and may guide use of PI3K/Akt/mTOR pathway inhibitors.

Key take-home: PTEN loss—whether by germline mutation or somatic inactivation—is a driver of renal cell carcinoma with implications for genetic screening, prognostication, and targeted therapy.

References

  • Nature Genetics | 1997 | Identification of a candidate tumour suppressor gene, MMAC1, at chromosome 10q23.3 that is mutated in multiple advanced cancers. PMID:9090379
  • Urology | 2012 | Papillary renal cell carcinoma is associated with PTEN hamartoma tumor syndrome. PMID:22381246

Evidence Based Scoring (AI generated)

Gene–Disease Association

Moderate

9 germline RCC cases with SIR 31.7 in PHTS ([PMID:22381246]), recurrent somatic PTEN alterations in RCC specimens ([PMID:9090379])

Genetic Evidence

Moderate

Nine unrelated PHTS probands with RCC and multiple independent somatic PTEN events in renal tumors

Functional Evidence

Moderate

Restoration of PTEN suppresses RCC cell growth; lipid phosphatase-inactive mutants fail to inhibit Akt and tumor proliferation